1. Yang Y, Zhang T, Xiao R, Hao X, Zhang H, Qu H, Xie B, Wang T, Fang X. Platform-independent approach for cancer detection from gene expression profiles of peripheral blood cells. Brief Bioinform. 2019. pii: bbz02
2. Zhang Q, Ding N, Zhang L, Zhao X, Yang Y, Qu H, Fang X. Biological Databases for Hematology Research. Genomics Proteomics Bioinformatics. 2016;14(6):333-337.
3. Li Y, Zhang Q, Du Z, Lu Z, Liu S, Zhang L, Ding N, Bao B, Yang Y, Xiong Q, Wang H, Zhang Z, Qu H, Jia H, Fang X. MicroRNA 200a inhibits erythroid differentiation by targeting PDCD4 and THRB. Br J Haematol. 2017;176(1):50-64
4. Li Y, Liu S, Sun H, Yang Y, Qi H, Ding N, Zheng J, Dong X, Qu H, Zhang Z, Fang X. MiR-218 Inhibits Erythroid Differentiation and Alters Iron Metabolism by Targeting ALAS2 in K562 Cells. Int J Mol Sci. 2015;16(12):28156-68
5. Xu C#, Qu H#, Wang G#, Xie B, Shi Y, Yang Y, Zhao Z, Hu L, Fang X, Yan J, Feng L. A novel strategy for forensic age prediction by DNA methylation and support vector regression model. Sci Rep. 2015;5:17788
6. Liang F#, Qu H#, Lin Q#, Yang Y, Ruan X, Zhang B, Liu Y, Yu C, Zhang H, Fang X, Hao X. Molecular biomarkers screened by next-generation RNA sequencing for non-sentinel lymph node status prediction in breast cancer patients with metastatic sentinel lymph nodes. World J Surg Oncol. 2015;13:258
7. Wang H, Li Y, Wang S, Zhang Q, Zheng J, Yang Y, Qi H, Qu H, Zhang Z, Liu F, Fang X*. Knockdown of transcription factor forkhead box O3 (FOXO3) suppresses erythroid differentiation in human cells and zebrafish. Biochem Biophys Res Commun. 2015; 460(4):923-30.
8. Yang Y, Dong X, Xie B, Ding N, Chen J, Li Y, Zhang Q, Qu H, Fang X*. Databases and Web Tools for Cancer Genomics Study. Genomics Proteomics & Bioinformatics. 2015; 13(1):46-50.
9. Yang Y, Wang H, Chang KH, Qu H, Zhang Z, Xiong Q, Qi H, Cui P, Lin Q, Ruan X, Yang Y, Li Y, Shu C, Li Q, Wakeland EK, Yan J, Hu S, Fang X*. Transcriptome dynamics during human erythroid differentiation and development. Genomics. 2013; 102(5-6):431-41.
10. Chang KH, Huang A, Han H, Jiang Y, Fang X, Song CZ, Padilla S, Wang H, Qu H, Stamatoyannopoulos J, Li Q, Papayannopoulou T*. Transcriptional environment and chromatin architecture interplay dictates globin expression patterns of heterospecific hybrids derived from undifferentiated human embryonic stem cells or from their erythroid progeny. Exp Hematol. 2013; 41(11):967-979.
11. Xiong Q, Zhang Z, Chang KH, Qu H, Wang H, Qi H, Li Y, Ruan X, Yang Y, Yang Y, Li Y, Sandstrom R, Sabo PJ, Li Q, Stamatoyannopoulos G, Stamatoyannopoulos JA, Fang X*. Comprehensive characterization of erythroid-specific enhancers in the genomic regions of human Krüppel-like factors. BMC Genomics. 2013; 14:587.
12. Qu H, Fang X*. A brief review on the Human Encyclopedia of DNA Elements (ENCODE) project. Genomics Proteomics & Bioinformatics. 2012; 11(3):135-41.
13. Wang H#, Maurano MT#, Qu H#, Varley KE, Gertz J, Pauli F, Lee K, Canfield T, Weaver M, Sandstrom R, Thurman RE, Kaul R, Myers RM, and Stamatoyannopoulos JA*. Widespread plasticity in CTCF occupancy linked to DNA methylation. Genome Res. 22(9): 2012; 1680-8. (# Contributed equally)
14. Maurano MT#, Humbert R, Rynes E, Thurman RE, Haugen E, Wang H, Reynolds AP, Sandstrom R, Qu H, Brody J, Shafer A, Neri F, Lee K, Kutyavin T, Stehling-Sun S, Johnson AK, Canfield TK, Giste E, Diegel M, Bates D, Hansen RS, Neph S, Sabo PJ, Heimfeld S, Raubitschek A, Ziegler S, Cotsapas C, Sotoodehnia N, Glass I, Sunyaev SR, Kaul R, and Stamatoyannopoulos JA*. Systematic localization of common disease-associated variation in regulatory DNA. Science. 2012; 337(6099): 1190-5.(# Contributed equally)
15. Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC., Stergachis AB, Wang H, Vernot B, Garg K, John S, Sandstrom R, Bates D, Boatman L, Canfield TK, Diegel M, Dunn D, Ebersol AK, Frum T, Giste E, Johnson AK, Johnson EM, Kutyavin T, Lajoie B, Lee BK, Lee K, London D, Lotakis D, Neph S, Neri F, Nguyen ED, Qu H, Reynolds AP, Roach V, Safi A, Sanchez ME, Sanyal A, Shafer A, Simon JM, Song L, Vong S, Weaver M, Yan Y, Zhang Z, Zhang Z, Lenhard B, Tewari M, Dorschner MO, Hansen RS, Navas PA, Stamatoyannopoulos G, Iyer VR, Lieb JD, Sunyaev SR, Akey JM, Sabo PJ, Kaul R, Furey TS, Dekker J, Crawford GE, and Stamatoyannopoulos JA*. The accessible chromatin landscape of the human genome. Nature. 2012; 489(7414): 75-82.
16. ENCODE Project Consortium. An integrated encyclopedia of DNA elements in the human genome. Nature. 2012; 489(7414): 57-74.
17. Wu H, Qu H, Wan N, Zhang Z, Hu S, and Yu J*. Strand-biased gene distribution in bacteria is related to both horizontal gene transfer and strand-biased nucleotide composition. Genomics Proteomics & Bioinformatics. 2012; 10(4): 189-96.
18. Qu H, Wu H, Zhang T, Zhang Z, Hu S, Yu J*. Nucleotide compositional asymmetry between the leading and lagging strands of eubacterial genomes. Res Microbiol. 2010; 161(10):838-46.
19. Song S, Huang Y, Wang X, Wei G, Qu H, Wang W, Ge X, Hu S, Liu G, Liang Y, Yu J*. HRGD: a database for mining potential heterosis-related genes in plants. Plant Mol Biol. 2009; 69(3):255-60.
20. Song S#, Qu H#, Chen C, Hu S, Yu J*. Differential gene expression in an elite hybrid rice cultivar (Oryza sativa, L) and its parental lines based on SAGE data. BMC Plant Biol. 2007;7:49
